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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76722291_76723504_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76722291 - 76723504
Intron Length:
1214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTTAGTATG
5'SS Class:
major
3'SS Sequence:
TTATTTCTAAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTTTGTAAATT
Flanking Amino Acid:
VFADERPSARIKRSLTCRSP
Intron Amino Acid Position:
759

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.2
76.7
38.5
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
69.7
0.44
1.1
72.5
36.6
Minor 5ss
37.4
-1.4
2.7
44.8
36.5
Minor BPS
55.7
0.26
2.3
82.74
39.5

Associated Gene:

Gene:
VWF
Ensembl Gene ID:
ENSAPLG00000002805
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002949
76675951 - 76824887
148937
ENSAPLT00000045676
76675951 - 76824914
148964