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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76723666_76732557_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76723666 - 76732557
Intron Length:
8892

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
GTGTTTTGCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATGAT
U12 Branch Point Sequence:
TGATGATGAACT
Flanking Amino Acid:
ISGCLCPKGMVRHENKCVAP
Intron Amino Acid Position:
813

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
65.4
46
Major BPS
69.5
0.48
1.2
59.7
46.7
Major PPT
69.7
0.44
1
69.4
41.7
Minor 5ss
38.9
-1.2
2.8
45.7
43.7
Minor BPS
48.9
-0
2.1
72.32
43.6

Associated Gene:

Gene:
VWF
Ensembl Gene ID:
ENSAPLG00000002805
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045676
76675951 - 76824914
148964
ENSAPLT00000002949
76675951 - 76824887
148937