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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76741318_76744566_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76741318 - 76744566
Intron Length:
3249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTATGTATA
5'SS Class:
major
3'SS Sequence:
TTTTCTTGTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
GACTTGATAACA
Flanking Amino Acid:
SGEIELFSGNVNIKVPPKDS
Intron Amino Acid Position:
939

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
81.8
31
Major BPS
75
0.62
1
65.3
41.5
Major PPT
88.6
0.87
0.8
88.4
28.7
Minor 5ss
47.8
-0.2
2.5
64
40.7
Minor BPS
45.8
-0.3
2.2
57.72
41.5

Associated Gene:

Gene:
VWF
Ensembl Gene ID:
ENSAPLG00000002805
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045676
76675951 - 76824914
148964
ENSAPLT00000002949
76675951 - 76824887
148937