About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76750027_76752789_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76750027 - 76752789
Intron Length:
2763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGACAG
5'SS Class:
major
3'SS Sequence:
GTGACTTTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTACTGTTAAAC
Flanking Amino Acid:
NREDPQHCKSCLCQGKNLSC
Intron Amino Acid Position:
1225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1
56.9
41.8
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
71.7
0.49
0.9
65.8
40.8
Minor 5ss
37.5
-1.4
3
44.3
44.5
Minor BPS
49.6
-0
2.1
65.75
39.4

Associated Gene:

Gene:
VWF
Ensembl Gene ID:
ENSAPLG00000002805
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045676
76675951 - 76824914
148964
ENSAPLT00000002949
76675951 - 76824887
148937