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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76754130_76754794_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76754130 - 76754794
Intron Length:
665

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGTTG
5'SS Class:
major
3'SS Sequence:
TTTTCCCCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATGT
Flanking Amino Acid:
CSHKRWTEIPELCNKPMDIM
Intron Amino Acid Position:
1672

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
68.9
38.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.9
0.76
0.7
81.9
22.9
Minor 5ss
34.3
-1.8
3.4
45.9
49.3
Minor BPS
50.6
0.1
2
74.99
41.9

Associated Gene:

Gene:
VWF
Ensembl Gene ID:
ENSAPLG00000002805
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045676
76675951 - 76824914
148964
ENSAPLT00000002949
76675951 - 76824887
148937