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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76767486_76769986_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76767486 - 76769986
Intron Length:
2501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
TAAAATATACCT
Flanking Amino Acid:
NSEFINKVCLDPVRECIDED
Intron Amino Acid Position:
1863

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
77.7
33.5
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
87.7
0.85
0.7
85.1
29.7
Minor 5ss
40
-1.1
2.7
42.4
44.3
Minor BPS
43.2
-0.4
1.9
61.03
42

Associated Gene:

Gene:
VWF
Ensembl Gene ID:
ENSAPLG00000002805
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002949
76675951 - 76824887
148937