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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76781501_76787352_F

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76781501 - 76787352
Intron Length:
5852

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTC|GTAAGGAAT
5'SS Class:
major
3'SS Sequence:
CTGTCTTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TCCATCTAAAGA
Flanking Amino Acid:
CIDWRTPEFCPMKCPTYLIY
Intron Amino Acid Position:
2175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.9
0.42
1.3
71.3
40.1
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
76.8
0.6
0.8
69.1
37
Minor 5ss
35.5
-1.7
3.3
49.2
41.5
Minor BPS
46.3
-0.2
2
54.58
44.7

Associated Gene:

Gene:
VWF
Ensembl Gene ID:
ENSAPLG00000002805
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002949
76675951 - 76824887
148937
ENSAPLT00000045676
76675951 - 76824914
148964