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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76791221_76791337_F

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76791221 - 76791337
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCGCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ATTTTGTGAACG
Flanking Amino Acid:
CTLRPCNTTKSVQCGPCEVP
Intron Amino Acid Position:
2278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
71.7
40.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
82
0.72
0.8
73.7
36.9
Minor 5ss
42
-0.9
2.8
53.9
43.5
Minor BPS
51.9
-0
2.2
66.24
41.5

Associated Gene:

Gene:
VWF
Ensembl Gene ID:
ENSAPLG00000002805
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045676
76675951 - 76824914
148964
ENSAPLT00000002949
76675951 - 76824887
148937