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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76791413_76791967_F

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76791413 - 76791967
Intron Length:
555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAGGTTCT
5'SS Class:
major
3'SS Sequence:
TTTCTCTTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAC
U12 Branch Point Sequence:
ACTCCCTCAATT
Flanking Amino Acid:
PSQCCPEYECVCDLVSCDLP
Intron Amino Acid Position:
2303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
74.1
37.2
Major BPS
73.9
0.59
1
65.3
41.6
Major PPT
85
0.79
0.6
84.9
22.7
Minor 5ss
41.6
-0.9
3.1
55.7
43.9
Minor BPS
64.2
0.52
1.5
76.33
40.3

Associated Gene:

Gene:
VWF
Ensembl Gene ID:
ENSAPLG00000002805
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045676
76675951 - 76824914
148964
ENSAPLT00000002949
76675951 - 76824887
148937