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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76831062_76831165_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
76831062 - 76831165
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTATGG
5'SS Class:
major
3'SS Sequence:
CTTTCTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGCCAT
U12 Branch Point Sequence:
CTTTCTTCTACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
57.9
41.8
Major BPS
62.2
0.3
1.4
72.5
43.5
Major PPT
89
0.88
0.6
83.8
24.4
Minor 5ss
43.5
-0.7
2.8
56.7
47.4
Minor BPS
56.7
0.2
1.9
71.31
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017977
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028084
76831004 - 76879396
48393