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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76843600_76872699_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76843600 - 76872699
Intron Length:
29100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
CTTCATGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCACTACTT
Flanking Amino Acid:
AGLEIEKDAENKSQGLSFVR
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
78.9
35.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
79.7
0.67
0.9
76.5
37.3
Minor 5ss
34
-1.8
3.5
46.6
48.7
Minor BPS
52.3
0.15
2.2
81.93
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017977
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028084
76831004 - 76879396
48393