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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76872799_76876943_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76872799 - 76876943
Intron Length:
4145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTACTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTTACTC
Flanking Amino Acid:
LHKIKMPTKKMYEIKEEGGI
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99
1.15
0.6
96.2
11.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.8
0.72
0.9
81.4
35.2
Minor 5ss
39.3
-1.2
2.8
50.9
45.5
Minor BPS
60.8
0.32
1.8
74.77
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017977
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028084
76831004 - 76879396
48393