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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76877093_76878366_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76877093 - 76878366
Intron Length:
1274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
TCAACAATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TGTCTCTCAACA
Flanking Amino Acid:
SYPFSREKIYLYNIRDKDTF
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
75.3
33.8
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
64.2
0.32
1
60
40.2
Minor 5ss
35.5
-1.6
2.9
49.8
40.3
Minor BPS
64.7
0.46
1.5
74
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017977
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028084
76831004 - 76879396
48393