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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76887657_76904668_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76887657 - 76904668
Intron Length:
17012

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACATCA
5'SS Class:
major
3'SS Sequence:
TCTTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
FYKFQPIDLIRKYFGEKIGL
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
71.4
35.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
93
0.97
0.6
91.8
19.1
Minor 5ss
43.8
-0.7
2.9
57.7
46.5
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002928
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002960
76884760 - 77025362
140603