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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76904804_76907650_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76904804 - 76907650
Intron Length:
2847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
TTACCATTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
ATGTACTTACCA
Flanking Amino Acid:
GCITIESDIPSKEMCDQRNA
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
84.4
33.5
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
75.2
0.57
0.9
68.9
35.8
Minor 5ss
42
-0.9
2.9
58.6
45.7
Minor BPS
59.5
0.29
1.8
70.74
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002928
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002960
76884760 - 77025362
140603