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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76911681_76984655_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76911681 - 76984655
Intron Length:
72975

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
GTTACTTTATCT
Flanking Amino Acid:
WDLTGLEEEEDEKDKLTWND
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
85.1
25.6
Major BPS
75.1
0.62
1
65.6
41
Major PPT
80.9
0.7
0.9
75.8
38.1
Minor 5ss
46.5
-0.4
2.7
61.9
36.7
Minor BPS
65.7
0.57
1.6
81.52
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002928
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002960
76884760 - 77025362
140603