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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76984731_76990779_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76984731 - 76990779
Intron Length:
6049

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAGTAA
5'SS Class:
major
3'SS Sequence:
CATTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
TCATACTTAAAC
Flanking Amino Acid:
AANCGLILFMIMLTFSAVFG
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
67
34.3
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
86.2
0.81
0.8
80.7
30.8
Minor 5ss
35.5
-1.6
3.4
43
46.5
Minor BPS
63.5
0.4
1.6
69.86
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002928
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002960
76884760 - 77025362
140603