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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_77017483_77023397_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
77017483 - 77023397
Intron Length:
5915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATGC
5'SS Class:
strong_major
3'SS Sequence:
CCTTCATTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTGAT
U12 Branch Point Sequence:
CCTTCATTGACA
Flanking Amino Acid:
SPFAQDVLFCRFKDYREPPW
Intron Amino Acid Position:
508

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
69.3
36.6
Major BPS
72.4
0.56
1.2
63.1
44.4
Major PPT
72.7
0.51
1
68.3
36.5
Minor 5ss
37.6
-1.4
3.2
50.9
45.7
Minor BPS
64.6
0.45
1.7
71.47
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002928
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002960
76884760 - 77025362
140603