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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_77078054_77079389_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
77078054 - 77079389
Intron Length:
1336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGAGAG
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTATATTGACT
Flanking Amino Acid:
MIPSRAFHMILQVNKVMSI
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
60.4
38.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
96.2
1.04
0.5
92.4
17.6
Minor 5ss
36
-1.6
3.3
43.2
45.5
Minor BPS
64.9
0.55
1.6
84.96
34.9

Associated Gene:

Gene:
NTF3
Ensembl Gene ID:
ENSAPLG00000001212
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001199
77077259 - 77137384
60126