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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_7709492_7716586_F

Intron Information:

Intron Rank:
130786
Intron Class:
major
Intron Phase:
Intron Coordinates:
7709492 - 7716586
Intron Length:
7095

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGCATG
5'SS Class:
major
3'SS Sequence:
ATCCTTTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTACAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1
67.1
43.8
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
81.8
0.72
0.8
80.2
31
Minor 5ss
49.2
-0
2.5
62.7
43.2
Minor BPS
61.6
0.34
1.7
74.65
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020215
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032266
7709334 - 7718819
9486