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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_7710220_7716586_F

Intron Information:

Intron Rank:
130782
Intron Class:
major
Intron Phase:
Intron Coordinates:
7710220 - 7716586
Intron Length:
6367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
ATCCTTTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTACAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
74.3
37.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
81.8
0.72
0.8
80.2
31
Minor 5ss
36.9
-1.5
2.6
45.1
42.8
Minor BPS
61.6
0.34
1.7
74.65
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020215
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032081
7710003 - 7718819
8817