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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_77143911_77147751_F

Intron Information:

Intron Rank:
144834
Intron Class:
major
Intron Phase:
Intron Coordinates:
77143911 - 77147751
Intron Length:
3841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTATGTATA
5'SS Class:
major
3'SS Sequence:
CTTTCTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
CTTTCTTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1
73.8
36.6
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
87.5
0.84
0.7
83
25.4
Minor 5ss
47.6
-0.2
2.5
65
40.2
Minor BPS
69.1
0.59
1.7
78.6
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028068
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019064
77143360 - 77148230
4871