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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_7716994_7717479_F

Intron Information:

Intron Rank:
130784
Intron Class:
major
Intron Phase:
Intron Coordinates:
7716994 - 7717479
Intron Length:
486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAAAATG
5'SS Class:
major
3'SS Sequence:
TCTCTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TTGCTCATGATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.1
68.8
42.1
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
89
0.88
0.6
84.2
23.7
Minor 5ss
36
-1.6
3.1
40.8
45.2
Minor BPS
48.5
-0.2
1.7
56.19
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020215
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032081
7710003 - 7718819
8817
ENSAPLT00000045332
7709334 - 7718819
9486
ENSAPLT00000044747
7716493 - 7718819
2327
ENSAPLT00000032266
7709334 - 7718819
9486