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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_7717564_7718761_F

Intron Information:

Intron Rank:
130785
Intron Class:
major
Intron Phase:
Intron Coordinates:
7717564 - 7718761
Intron Length:
1198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATGTCT
5'SS Class:
major
3'SS Sequence:
TTGTACCTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TTTTTTGTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
71.1
34.9
Major BPS
79
0.72
1
69
38.9
Major PPT
76.3
0.59
0.9
70.6
35.8
Minor 5ss
34
-1.8
3.3
48.1
47.5
Minor BPS
54.3
0.21
2.2
82.56
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020215
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044747
7716493 - 7718819
2327
ENSAPLT00000032266
7709334 - 7718819
9486
ENSAPLT00000032081
7710003 - 7718819
8817
ENSAPLT00000045332
7709334 - 7718819
9486