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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_77214921_77236375_F

Intron Information:

Intron Rank:
143491
Intron Class:
major
Intron Phase:
Intron Coordinates:
77214921 - 77236375
Intron Length:
21455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCATC
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTAAT
U12 Branch Point Sequence:
CTTTCCCTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
78.1
36.6
Major BPS
69
0.47
1.2
69.9
35.3
Major PPT
83.4
0.75
0.8
81.2
29.2
Minor 5ss
44
-0.7
2.9
60.8
43.8
Minor BPS
58.9
0.36
2
80.43
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027311
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028773
77214804 - 77286433
71630
ENSAPLT00000028294
77214582 - 77292671
78090
ENSAPLT00000022914
77214582 - 77254385
39804