About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_7728016_7728312_R

Intron Information:

Intron Rank:
138660
Intron Class:
major
Intron Phase:
Intron Coordinates:
7728016 - 7728312
Intron Length:
297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAA
U12 Branch Point Sequence:
AGATGCTAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
70.1
0.5
1.1
69.9
35.3
Major PPT
87.6
0.84
0.8
85.1
34.9
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
52.7
0.16
2.1
72.08
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022108
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029487
7727747 - 7735919
8173
ENSAPLT00000026252
7727747 - 7754600
26854
ENSAPLT00000019747
7726931 - 7729118
2188