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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_7728377_7730338_R

Intron Information:

Intron Rank:
138663
Intron Class:
major
Intron Phase:
Intron Coordinates:
7728377 - 7730338
Intron Length:
1962

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTGAGTTGG
5'SS Class:
major
3'SS Sequence:
GAATTTCCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCATACTGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
67.8
39.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74.7
0.55
0.9
70.7
40.5
Minor 5ss
36.6
-1.5
2.9
44.8
43.4
Minor BPS
60.2
0.4
1.6
74.93
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022108
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029487
7727747 - 7735919
8173
ENSAPLT00000026252
7727747 - 7754600
26854