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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_77305573_77315731_R

Intron Information:

Intron Rank:
131480
Intron Class:
major
Intron Phase:
Intron Coordinates:
77305573 - 77315731
Intron Length:
10159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTCTGTAAG
5'SS Class:
major
3'SS Sequence:
TTCCCTTCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAA
U12 Branch Point Sequence:
CTTCCCTTCATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.3
70.6
41.3
Major BPS
72
0.55
1.1
63.4
44.3
Major PPT
78
0.63
0.8
77.8
29.4
Minor 5ss
36.6
-1.5
2.5
42
44.7
Minor BPS
62.1
0.36
1.8
71.44
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017948
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025804
77304504 - 77319418
14915