About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_7732968_7735858_R

Intron Information:

Intron Rank:
138669
Intron Class:
major
Intron Phase:
Intron Coordinates:
7732968 - 7735858
Intron Length:
2891

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGTTC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTAAA
U12 Branch Point Sequence:
TTAGTCTAAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
75.7
34.8
Major BPS
67.6
0.44
1.2
69.9
35.3
Major PPT
93.9
0.99
0.6
92.8
24.8
Minor 5ss
41.4
-1
3.3
55.7
43.3
Minor BPS
53.1
0.18
1.9
73.39
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022108
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029487
7727747 - 7735919
8173