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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_77409205_77409291_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
77409205 - 77409291
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCACTGGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAC
U12 Branch Point Sequence:
TGTTCCTTCACT
Flanking Amino Acid:
WKRYLTIMQLVFVLAVYGNH
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
81.6
31.3
Major BPS
65.1
0.38
1.1
68.9
36.5
Major PPT
65.7
0.35
1
60
40.4
Minor 5ss
37.6
-1.4
2.8
48.3
41.8
Minor BPS
78.7
0.98
1.7
92.9
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002935
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002968
77408728 - 77417830
9103