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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_77412766_77413767_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
77412766 - 77413767
Intron Length:
1002

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TGAACATAAAAT
Flanking Amino Acid:
MMLSSYMFYEFLITSVLDDY
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
89.3
0.88
0.8
87.9
29.4
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
46.5
-0.1
2
65.53
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002935
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002968
77408728 - 77417830
9103