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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_77413956_77415610_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
77413956 - 77415610
Intron Length:
1655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
GCAAATTTGACT
Flanking Amino Acid:
EFYNWILESGDPRTDPWPLV
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
78
38.6
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
90.8
0.92
0.7
88.7
28.3
Minor 5ss
33.7
-1.9
3
42.3
44.5
Minor BPS
49.5
0.04
1.6
62.25
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002935
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002968
77408728 - 77417830
9103