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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_77577957_77582857_R

Intron Information:

Intron Rank:
145031
Intron Class:
major
Intron Phase:
Intron Coordinates:
77577957 - 77582857
Intron Length:
4901

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGACT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCTCACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TAACATTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
77.8
36.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
69.8
0.45
0.9
63.5
38.2
Minor 5ss
41
-1
3.1
58.1
46.3
Minor BPS
61.7
0.36
1.5
68.39
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025430
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024983
77577816 - 77595665
17850