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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_77651807_77654830_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
77651807 - 77654830
Intron Length:
3024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TCTCTCATATTT
Flanking Amino Acid:
GLNLHWDFKQGSAVINRNTK
Intron Amino Acid Position:
579

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
75
35.3
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
88.1
0.86
0.6
84.7
22.9
Minor 5ss
31.6
-2.1
3.3
41.1
45.4
Minor BPS
48.8
-0
1.8
69.66
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002946
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002981
77651216 - 77684444
33229