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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_77654999_77655577_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
77654999 - 77655577
Intron Length:
579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCAA
5'SS Class:
major
3'SS Sequence:
CCTTGCCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CTTTAATTCACT
Flanking Amino Acid:
MYPCHAYSPQHLFYHSTGEM
Intron Amino Acid Position:
523

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
67.7
39
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
80.6
0.69
0.8
76.8
31.9
Minor 5ss
30.1
-2.3
3.2
38.5
46.5
Minor BPS
51.2
0.12
2.2
78.09
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002946
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002981
77651216 - 77684444
33229