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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_77656708_77658014_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
77656708 - 77658014
Intron Length:
1307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGCAATG
5'SS Class:
major
3'SS Sequence:
GGTGTTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
ATGTTCTGAAAT
Flanking Amino Acid:
VYFAWNLPVENSGIDYGDVS
Intron Amino Acid Position:
445

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.8
0.35
1.2
62.5
43.9
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
76.8
0.6
1
69.6
41.6
Minor 5ss
35.8
-1.6
3.3
48
47.7
Minor BPS
61.8
0.45
1.5
76.42
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002946
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002981
77651216 - 77684444
33229