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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_77658201_77664858_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
77658201 - 77664858
Intron Length:
6658

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCCAT
5'SS Class:
major
3'SS Sequence:
CTTCTTGATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTTACCTGACAT
Flanking Amino Acid:
GGENVELGLRAWQCGGKIEV
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
68.8
43.8
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
76.9
0.6
0.9
69.3
40.9
Minor 5ss
39.1
-1.2
3.1
48.3
47.3
Minor BPS
55.3
0.25
1.9
79.38
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002946
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002981
77651216 - 77684444
33229