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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_77664974_77669106_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
77664974 - 77669106
Intron Length:
4133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATACTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTCTTTCCAACT
Flanking Amino Acid:
YALKDETAPVRSPSIMGILA
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
87.5
28.9
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
84
0.77
0.8
78
34.9
Minor 5ss
39.8
-1.1
2.8
52.2
44.4
Minor BPS
53
0.17
1.9
76.16
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002946
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002981
77651216 - 77684444
33229