About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_77669305_77670846_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
77669305 - 77670846
Intron Length:
1542

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTTGGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TGTTCATTCATT
Flanking Amino Acid:
LDAHIEVNMAWAEPILSRIK
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
73.5
37.2
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
74.5
0.55
1
72.9
37.3
Minor 5ss
35.7
-1.6
3.2
45.3
43.7
Minor BPS
59.9
0.39
2
81.98
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002946
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002981
77651216 - 77684444
33229