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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_77672292_77673881_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
77672292 - 77673881
Intron Length:
1590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTAA
5'SS Class:
major
3'SS Sequence:
TCTTCTATTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TCTTCAGAAACT
Flanking Amino Acid:
DRPITDTRSPSCKKKTYPKD
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
65.4
36.8
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
86.1
0.81
0.7
80.6
29.9
Minor 5ss
34.3
-1.8
3.5
46.3
49
Minor BPS
48
-0
2.5
76.66
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002946
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003035
77672117 - 77711690
39574
ENSAPLT00000002981
77651216 - 77684444
33229
ENSAPLT00000047794
77672117 - 77713909
41793