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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_77695892_77697996_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
77695892 - 77697996
Intron Length:
2105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCATTTCTTAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CATTTCTTAAAG
Flanking Amino Acid:
PWLTRDKVDRFHITDTRSPS
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
77.6
32.8
Major BPS
100
1.24
0.5
100
0
Major PPT
74
0.54
1
74.7
33.8
Minor 5ss
31.6
-2.1
3.1
31.7
42.6
Minor BPS
65.9
0.36
1.5
65.42
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002946
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047794
77672117 - 77713909
41793
ENSAPLT00000003035
77672117 - 77711690
39574