Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_77706441_77709338_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

77706441 - 77709338

Intron Length:

2898

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAATTTT

5'SS Class:

major

3'SS Sequence:

TGGCTTGTTCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTAAA

U12 Branch Point Sequence:

TCACTCTTAAAT

Flanking Amino Acid:

INLVGKEWETKNFSFEDEFV

Intron Amino Acid Position:

128

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.5

0.7

27.7

Major BPS

73.8

0.59

0.9

26.8

Major PPT

74.2

0.54

65.1

45.5

Minor 5ss

47.2

-0.3

2.9

66.9

38.4

Minor BPS

65.2

0.55

1.4

75.39

40.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000002946

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047794

77672117 - 77713909

41793

ENSAPLT00000003035

77672117 - 77711690

39574