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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_77710677_77713746_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
77710677 - 77713746
Intron Length:
3070

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGCG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCACAT
U12 Branch Point Sequence:
TCTTTCCCATTT
Flanking Amino Acid:
SARGLWLPRAGPGISALAAA
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
40.2
Major BPS
68.9
0.47
1
75
30
Major PPT
86.8
0.83
0.9
84.6
36
Minor 5ss
31.2
-2.1
3.2
38.5
46.7
Minor BPS
46
-0.2
2
68.16
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002946
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047794
77672117 - 77713909
41793