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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_7772695_7775511_R

Intron Information:

Intron Rank:
135178
Intron Class:
major
Intron Phase:
Intron Coordinates:
7772695 - 7775511
Intron Length:
2817

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
GATTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
GTGTCATTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
80.8
0.69
0.9
77.2
41.6
Minor 5ss
35.1
-1.7
2.7
42.8
44
Minor BPS
59.7
0.38
1.9
78.17
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020093
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043655
7772491 - 7781023
8533