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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_77784468_77785219_R

Intron Information:

Intron Rank:
131377
Intron Class:
major
Intron Phase:
Intron Coordinates:
77784468 - 77785219
Intron Length:
752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
TTCTGTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAA
U12 Branch Point Sequence:
CTATGCTCAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
67.9
37.3
Major BPS
70.6
0.51
1.1
71.6
36.4
Major PPT
87.7
0.85
0.8
80.2
37.3
Minor 5ss
33.5
-1.9
2.7
39.1
38.9
Minor BPS
48.7
-0.2
2
56.17
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017889
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020527
77744846 - 77786776
41931