Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_77788460_77789819_F

Intron Information:

Intron Rank:

145597

Intron Class:

major

Intron Phase:

Intron Coordinates:

77788460 - 77789819

Intron Length:

1360

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGCGAC

5'SS Class:

major

3'SS Sequence:

TTTTTTTTTCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTAAT

U12 Branch Point Sequence:

AGTTGCTAATCA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.1

0.69

66.7

39.6

Major BPS

79.3

0.73

1.1

77.9

34.9

Major PPT

98.2

1.08

0.5

92.3

26.6

Minor 5ss

35.2

-1.7

3.6

48.7

47.8

Minor BPS

46.5

-0.2

2.3

62.26

43.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028468

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035150

77787907 - 77793933

6027

ENSAPLT00000035713

77787907 - 77790159

2253