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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_77789897_77793768_F

Intron Information:

Intron Rank:
145598
Intron Class:
major
Intron Phase:
Intron Coordinates:
77789897 - 77793768
Intron Length:
3872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
CTACTTTCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
TTTTTCCAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.8
83.9
30.3
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
76.9
0.61
0.8
69.7
36.5
Minor 5ss
44.3
-0.6
3.1
64.1
47.4
Minor BPS
63.3
0.49
2
88.18
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028468
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035150
77787907 - 77793933
6027