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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_77841893_77846541_R

Intron Information:

Intron Rank:
145688
Intron Class:
major
Intron Phase:
Intron Coordinates:
77841893 - 77846541
Intron Length:
4649

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGGGTTTG
5'SS Class:
major
3'SS Sequence:
TTCTCACTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTTCTCACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
67.5
40.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
83.3
0.75
0.8
76.9
30.7
Minor 5ss
37.1
-1.5
3.2
45
44.5
Minor BPS
62
0.45
1.8
83.48
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025775
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045858
77840629 - 77847280
6652
ENSAPLT00000042301
77840629 - 77847497
6869
ENSAPLT00000036908
77840629 - 77847428
6800
ENSAPLT00000017195
77829561 - 77847497
17937