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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_77846629_77847256_R

Intron Information:

Intron Rank:
145697
Intron Class:
major
Intron Phase:
Intron Coordinates:
77846629 - 77847256
Intron Length:
628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
CTCCTCCACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTCTCCTCCACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
69.7
0.44
0.9
61.7
33.9
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
60.4
0.31
2
74.59
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025775
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045858
77840629 - 77847280
6652