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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_77846629_77847482_R

Intron Information:

Intron Rank:
145689
Intron Class:
major
Intron Phase:
Intron Coordinates:
77846629 - 77847482
Intron Length:
854

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTTTA
5'SS Class:
major
3'SS Sequence:
CTCCTCCACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTCTCCTCCACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.2
76.2
35.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
69.7
0.44
0.9
61.7
33.9
Minor 5ss
38.7
-1.3
3
49.8
46.5
Minor BPS
60.4
0.31
2
74.59
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025775
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042301
77840629 - 77847497
6869
ENSAPLT00000017195
77829561 - 77847497
17937